Titin-truncating variants in hiPSC cardiomyocytes induce pathogenic proteinopathy and sarcomere defects with preserved core contractile machinery.

Titin-truncating variants (TTNtv) are the single largest genetic cause of dilated cardiomyopathy (DCM). In this study we modeled disease phenotypes of A-band TTNtv-induced DCM in human induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) using genome editing and tissue engineering technologies. Transcriptomic, cellular, and micro-tissue studies revealed that A-band TTNtv hiPSC-CMs exhibit pathogenic proteinopathy, sarcomere defects, aberrant Na+ channel activities, and contractile dysfunction. These phenotypes establish a dual mechanism of poison peptide effect and haploinsufficiency that collectively contribute to DCM pathogenesis. However, TTNtv cellular defects did not interfere with the function of the core contractile machinery, the actin-myosin-troponin-Ca2+ complex, and preserved the therapeutic mechanism of sarcomere modulators. Treatment of TTNtv cardiac micro-tissues with investigational sarcomere modulators augmented contractility and resulted in sustained transcriptomic changes that promote reversal of DCM disease signatures. Together, our findings elucidate the underlying pathogenic mechanisms of A-band TTNtv-induced DCM and demonstrate the validity of sarcomere modulators as potential therapeutics.

Induction of site-specific chromosomal translocations in embryonic stem cells by CRISPR/Cas9.

Chromosomal translocation is the most common form of chromosomal abnormality and is often associated with congenital genetic disorders, infertility, and cancers. The lack of cellular and animal models for chromosomal translocations, however, has hampered our ability to understand the underlying disease mechanisms and to develop new therapies. Here, we show that site-specific chromosomal translocations can be generated in mouse embryonic stem cells (mESCs) via CRISPR/Cas9. Mouse ESCs carrying translocated chromosomes can be isolated and expanded to establish stable cell lines. Furthermore, chimeric mice can be generated by injecting these mESCs into host blastocysts. The establishment of ESC-based cellular and animal models of chromosomal translocation by CRISPR/Cas9 provides a powerful platform for understanding the effect of chromosomal translocation and for the development of new therapeutic strategies.

Molecular basis of embryonic stem cell self-renewal: from signaling pathways to pluripotency network.

Embryonic stem cells (ESCs) can be maintained in culture indefinitely while retaining the capacity to generate any type of cell in the body, and therefore not only hold great promise for tissue repair and regeneration, but also provide a powerful tool for modeling human disease and understanding biological development. In order to fulfill the full potential of ESCs, it is critical to understand how ESC fate, whether to self-renew or to differentiate into specialized cells, is regulated. On the molecular level, ESC fate is controlled by the intracellular transcriptional regulatory networks that respond to various extrinsic signaling stimuli. In this review, we discuss and compare important signaling pathways in the self-renewal and differentiation of mouse, rat, and human ESCs with an emphasis on how these pathways integrate into ESC-specific transcription circuitries. This will be beneficial for understanding the common and conserved mechanisms that govern self-renewal, and for developing novel culture conditions that support ESC derivation and maintenance.

STAT3 phosphorylation at tyrosine 705 and serine 727 differentially regulates mouse ESC fates.

STAT3 can be transcriptionally activated by phosphorylation of its tyrosine 705 or serine 727 residue. In mouse embryonic stem cells (mESCs), leukemia inhibitory factor (LIF) signaling maintains pluripotency by inducing JAK-mediated phosphorylation of STAT3 Y705 (pY705). However, the function of phosphorylated S727 (pS727) in mESCs remains unclear. In this study, we examined the roles of STAT3 pY705 and pS727 in regulating mESC identities, using a small molecule-based system to post-translationally modulate the quantity of transgenic STAT3 in STAT3(-/-) mESCs. We demonstrated that pY705 is absolutely required for STAT3-mediated mESC self-renewal, while pS727 is dispensable, serving only to promote proliferation and optimal pluripotency. S727 phosphorylation is regulated directly by fibroblast growth factor/Erk signaling and crucial in the transition of mESCs from pluripotency to neuronal commitment. Loss of S727 phosphorylation resulted in significantly reduced neuronal differentiation potential, which could be recovered by a S727 phosphorylation mimic. Moreover, loss of pS727 sufficed LIF to reprogram epiblast stem cells to naïve pluripotency, suggesting a dynamic equilibrium of STAT3 pY705 and pS727 in the control of mESC fate.

Rapid and cost-effective gene targeting in rat embryonic stem cells by TALENs.

The rat is the preferred animal model in many areas of biomedical research and drug development. Genetic manipulation in rats has lagged behind that in mice due to the lack of efficient gene targeting tools. Previously, we generated a knockout rat via conventional homologous recombination in rat embryonic stem (ES) cells. Here, we show that efficient gene targeting in rat ES cells can be achieved quickly through transcription activator-like effector nuclease (TALEN)-mediated DNA double-strand breaks. Using the Golden Gate cloning technique, we constructed a pair of TALEN targeting vectors for the gene of interest in 5 days. After gene transfection, the targeted rat ES cell colonies were isolated, screened, and confirmed by PCR without the need of drug selection. Our results suggest that TALEN-mediated gene targeting is a superior means of establishing genetically modified rat ES cell lines with high efficiency and short turnaround time.

Sorption of norfloxacin onto humic acid extracted from weathered coal.

Norfloxacin (NOR), is an ionizable and polar antimicrobial compound, and it may enter the environment in substantial amounts via the application of manure or sewage as a fertilizer. Sorption of NOR onto humic acid (HA) may affect its environmental fate. In this study, HA extracted from weathered coal was used to investigate the sorption of NOR at different solution chemistry conditions (pH, ionic strength) and temperatures. The sorption of NOR onto HA showed a two-stage sorption process with an equilibration time of 48 h. The sorption kinetic curve fitted well with a pseudo second-order kinetic model. Thermodynamic characteristics demonstrated that the sorption of NOR onto HA was a spontaneous and exothermic process predominated by physical sorption. All sorption isotherms fitted well with the Freundlich and Langmuir models and they were highly nonlinear with values of n between 0.4 and 0.5, suggesting the high heterogeneity of HA. Increasing Ca2+ concentration resulted in a considerable reduction in the K(d) values of NOR, hinting that Ca2+ had probably competed with NOR(+,0) for the cation exchange sites on the surfaces of HA. The sorption reached a maximum at pH 6.0 over the pH range of 2.0-8.0, implying that the primary sorption mechanism was cation exchange interaction between NOR(+,0) species and the negatively charged functional groups of HA. Spectroscopic evidence demonstrated that the piperazinyl moiety of NOR was responsible for sorption onto HA, while the carbonyl group and the aromatic structure of HA participated in adsorbing NOR.

Generating gene knockout rats by homologous recombination in embryonic stem cells.

We describe here a detailed protocol for generating gene knockout rats by homologous recombination in embryonic stem (ES) cells. This protocol comprises the following procedures: derivation and expansion of rat ES cells, construction of gene-targeting vectors, generation of gene-targeted rat ES cells and, finally, production of gene-targeted rats. The major differences between this protocol and the classical mouse gene-targeting protocol include ES cell culture methods, drug selection scheme, colony picking and screening strategies. This ES cell-based gene-targeting technique allows sophisticated genetic modifications to be performed in the rat, as many laboratories have been doing in the mouse for the past two decades. Recently we used this protocol to generate Tp53 (also known as p53) gene knockout rats. The entire process requires ∼1 year to complete, from derivation of ES cells to generation of knockout rats.

Genetic manipulations in the rat: progress and prospects.

PURPOSE OF REVIEW: Several advances have been made to manipulate the rat genome in the last 2 years. This review aims to describe these advances in rat genetic manipulations, with an emphasis on their current status and their prospects and applications in the postgenomic era. RECENT FINDINGS: Authentic rat embryonic stem cells were derived in 2008 using the 2i/3i culture system. This led to the generation of the first gene knockout rats via embryonic stem cell-based gene targeting. The development of zinc-finger nucleases (ZFNs) provided an alternative approach that avoids the necessity of germline competent embryonic stem cells. Meanwhile, improvements have been made to the well established random mutagenesis mediated by transposons or N-ethyl-N-nitrosourea (ENU). The in-vitro rat spermatogonial stem cell (SSC) system has greatly optimized these phenotype-driven approaches for future applications. SUMMARY: The rat has long been a prime model organism in physiological, pharmacological and neurobehavioral studies. The recent advances of rat reverse genetic approaches, together with the classical ENU and transposon mutagenesis system, will contribute tremendously to the deciphering of gene functions and the creation of rat disease models.

Beyond knockout rats: new insights into finer genome manipulation in rats.

The ability to "knockout" specific genes in mice via embryonic stem (ES) cell-based gene-targeting technology has significantly enriched our understanding of gene function in normal and disease phenotypes. Improvements on this original strategy have been developed to enable the manipulation of genomes in a more sophisticated fashion with unprecedented precision. The rat is the model of choice in many areas of scientific investigation despite the lack of rat genetic toolboxes. Most Recent advances of zinc finger nucleases (ZFNs) and rat ES cells are diminishing the gap between rat and mouse with respect to reverse genetic approaches. Importantly, the establishment of rat ES cell-based gene targeting technology, in combination with the unique advantages of using rats, provides new, exciting opportunities to create animal models that mimic human diseases more faithfully. We hereby report our recent results concerning finer genetic modifications in the rat, and propose their potential applications in addressing biological questions.

Remediation of soils contaminated with polychlorinated biphenyls by microwave-irradiated manganese dioxide.

The removal of polychlorinated biphenyls (PCBs) using microwave-irradiated manganese dioxide (MnO(2)) in PCB-contaminated soils under different conditions is investigated. The removal of PCB77 in two actual soil samples exhibits strong pH-dependent behavior, and the removal efficiency is higher in acidic soil (Ali-Perudic Ferrosols) than that in neutral soil (Udic Argosols). The removal kinetics of PCB77 using microwave-irradiated MnO(2) under different experimental conditions fits a pseudo-first-order kinetic model well. Both the removal efficiency and the kinetic constant (k) values of PCB77 in Ali-Perudic Ferrosols considerably increase, although in a nonlinear fashion, as the initial amount of MnO(2) is increased, as the treated soil mass is increased, and as the microwave power is increased. The reactivity of three PCBs (PCB28, PCB77, and PCB118) did not present as a function of the degree of chlorination in the reaction with microwave-irradiated MnO(2). The pronounced removal of three PCBs in contaminated soil (all above 95%) indicates that MnO(2) in combination with microwave irradiation is promising for technological applications that seek to remediate sites critically polluted with PCBs.

Nano rare-earth oxides induced size-dependent vacuolization: an independent pathway from autophagy.

Four rare earth oxides have been shown to induce autophagy. Interestingly, we often noticed plentiful vacuolization, which was not always involved in this autophagic process. In this study, we investigated three other rare-earth elements, including Yttrium (Y), Ytterbium (Yb), and Lanthanum (La). Autophagic effect could be induced by all of them but only Y(2)O(3) and Yb(2)O(3) could cause massive vacuolization. Y(2)O(3) and Yb(2)O(3) treated by sonication or centrifugation to reduce particle size were used to test vacuolization level in HeLa cell lines. The results showed that rare earth oxides-induced vacuolization is size-dependent and differs from autophagic pathway. To further clarify the characteristics of this autophagic process, we used MEF Atg-5 (autophagy associated gene 5) knockout cell line, and the result showed that the autophagic process induced by rare earth oxides is Atg-5-dependent and the observed vacuolization was independent from autophagy. Similar results could also be observed in our tests on 3-methyladenine(3-MA), a well-known autophagy inhibitor. In conclusion, for the first time, we clarified the relationship between massive vacuolization and autophagic process induced by rare earth oxides and pointed out the size effect of rare earth oxides on the formation of vacuoles, which give clues to further investigation on the mechanisms underlying their biological effects.

[Catalytic degradation of PCB77 by microwave-induced nano-particle metal oxides in diatomite].

The degradation of PCB77 in diatomite by microwave-induced catalytic oxidation was studied in a sealed vial, including four effects such as microwave (MV) radiating time, addition of different nano-particle metal oxides, concentration and type of acids and dosage of MnO2. The results indicated that PCB77 could be removed significantly by microwave-induced catalytic oxidation. Compared to control reactor (without MV radiation), the removal rate of PCB77 increased by twice after 1 min. In addition, the removal rate of PCB77 under MV radiation was gradually increased with time of radiation and then reached equilibrium after 10 min. The removal rates are about 50% and 20% by addition of H2SO4 and ultrapure water respectively. No significant removal was observed by addition of NaOH and without aqueous media. Moreover, catalytic degradation of PCB77 by microwave-induced nano-particle MnO2 had best removal rate was up to 90% after 1 min, in contrast with addition of nano-particle Fe2O3, CuO and Al2O3. The removal rate raised from 37.0% to 98.5% rapidly with the concentration of H2SO4 ranged from 1 mol/L to 8 mol/L, and H2SO4 mainly played a role of acidification but not oxidation. The addition of 0.01, 0.03 and 0.05 g MnO2 showed the similar result.